Gradaute Student,
Quantitative Systems Biology,
University of California, Merced
"The price of success is hard work, dedication to the job at hand, and the determination that whether we win or lose, we have applied the best of ourselves to the task at hand." Vince Lombardi
Research Project (Academic)
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University of California, Merced
Genomic analysis of RNASeq, miRNASeq and BAM sequencing data obtained from Melanoma patients (TCGA SKCM dataset) to study the significant drivers and metastatic marker genes during cancer progression using existing and novel bioinformatics tools.
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University of California, Merced
Long-term molecular dynamic simulation of Pyruvate Kinase (PKM2) protein using GROMACS to study the structural changes that occur upon fructose 1-6 phosphate (FBP) binding event which converts the protein into regulated form that aids towards cancer progression.
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University of California, Merced
Rule based constuction of Fatty Acid elongation and desaturation network in human metabolism. Machine learning approach in Mathematica was used to construct an extensive network of all the possible lipid compounds.
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University of Coimbra, Portugal
Automated construction and analysis of polyunsaturated fatty acid autoxidation reaction networks.
Research Project (Industry)
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XCode Life Sciences, India
Analysing the oncogenic effects of germline mutations in various tumorigenic genes. SNP analysis of candidate genes was performed to determine Mendelian inheritance of the computationally predicted disease. GWAS integrator was used for inference on potential genetic association.
Research Project (Independent)
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mutbase ( https://github.com/Ambuj-UF/mutbase ) ; Team Members - Ambuj Kumar, Mrinal Mishra, Rohit Gupta
R library for studying pathological affect of genetic mutations. Package is under initial developmental stage and mutbase team invites people to contribute with their ideas and coding skills.